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Species belonging to selected taxon:

Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042486
species: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156b (MI0001506)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACTCTCTATCTGTCA

mismatches: 1
bulges: 1

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pre-miRNA
TGACAGAAGAGAGTGAGCACACACGGTGGTTTCTTAGCATGAGTGCCATGTTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).)))))).


SIMILARITIES
miRBase ssp-MIR156: 2e-38

PMRD sbi-miR156b: 2e-42

microPC miR156: 9e-38
UniProt no hits

RFAM mir-156: 3e-41

Identical with: sbi-miR156b from PMRD (MNEST054394)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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